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kfuku52 / csubst

Molecular convergence detection
BSD 3-Clause "New" or "Revised" License
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pandas FutureWarning #27

Closed kfuku52 closed 1 year ago

kfuku52 commented 1 year ago 
/Users/kef74yk/opt/miniconda3/envs/pymol/lib/python3.8/site-packages/csubst/parser_pymol.py:111: FutureWarning: In a future version, `df.iloc[:, i] = newvals` will attempt to set the values inplace instead of always setting a new array. To retain the old behavior, use either `df[df.columns[i]] = newvals` or, if columns are non-unique, `df.isetitem(i, newvals)`
  df_tmp.loc[:,'codon_site_alignment'] = df_tmp.loc[:,'codon_site_alignment'].astype(int)
/Users/kef74yk/opt/miniconda3/envs/pymol/lib/python3.8/site-packages/csubst/parser_pymol.py:113: FutureWarning: In a future version, `df.iloc[:, i] = newvals` will attempt to set the values inplace instead of always setting a new array. To retain the old behavior, use either `df[df.columns[i]] = newvals` or, if columns are non-unique, `df.isetitem(i, newvals)`
  df.loc[:,'codon_site_'+seq_name] = df.loc[:,'codon_site_'+seq_name].fillna(0).astype(int)
/Users/kef74yk/opt/miniconda3/envs/pymol/lib/python3.8/site-packages/csubst/parser_pymol.py:111: FutureWarning: In a future version, `df.iloc[:, i] = newvals` will attempt to set the values inplace instead of always setting a new array. To retain the old behavior, use either `df[df.columns[i]] = newvals` or, if columns are non-unique, `df.isetitem(i, newvals)`
  df_tmp.loc[:,'codon_site_alignment'] = df_tmp.loc[:,'codon_site_alignment'].astype(int)
/Users/kef74yk/opt/miniconda3/envs/pymol/lib/python3.8/site-packages/csubst/parser_pymol.py:113: FutureWarning: In a future version, `df.iloc[:, i] = newvals` will attempt to set the values inplace instead of always setting a new array. To retain the old behavior, use either `df[df.columns[i]] = newvals` or, if columns are non-unique, `df.isetitem(i, newvals)`
  df.loc[:,'codon_site_'+seq_name] = df.loc[:,'codon_site_'+seq_name].fillna(0).astype(int)
Detected protein structure objects: 6S3K
/Users/kef74yk/opt/miniconda3/envs/pymol/lib/python3.8/site-packages/csubst/parser_pymol.py:93: FutureWarning: In a future version, `df.iloc[:, i] = newvals` will attempt to set the values inplace instead of always setting a new array. To retain the old behavior, use either `df[df.columns[i]] = newvals` or, if columns are non-unique, `df.isetitem(i, newvals)`
  df.loc[:,'codon_site_pdb_'+key] = df.loc[:,'codon_site_pdb_'+key].fillna(0).astype(int)
/Users/kef74yk/opt/miniconda3/envs/pymol/lib/python3.8/site-packages/csubst/parser_pymol.py:93: FutureWarning: In a future version, `df.iloc[:, i] = newvals` will attempt to set the values inplace instead of always setting a new array. To retain the old behavior, use either `df[df.columns[i]] = newvals` or, if columns are non-unique, `df.isetitem(i, newvals)`
  df.loc[:,'codon_site_pdb_'+key] = df.loc[:,'codon_site_pdb_'+key].fillna(0).astype(int)