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kfuku52 / csubst

Molecular convergence detection
BSD 3-Clause "New" or "Revised" License
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AttributeError: module 'numpy' has no attribute 'int' #29

Closed dupillir closed 1 year ago

dupillir commented 1 year ago

Hello,

I am currently using the CSUBST tool which works great! However when trying out the test run with the simulated data for the first time I encountered the following problem :

AttributeError: module 'numpy' has no attribute 'int'

Following the informations from this link I understand that the latest version of numpy (1.24.2) does not support the initial np.int attribute anymore and replaced it with .int.

Thus the instructions from the CSUBST code are incompatible with the latest version of numpy which will automatically be downloaded if you install it as of now.

To bypass this problem I downgraded to a previous version of numpy using the following command which allowed CSUBST to run.

pip install "numpy<1.24.0"

kfuku52 commented 1 year ago

Thank you for reporting the problem. I will fix it soon to make CSUBST compatible with the latest numpy.

kfuku52 commented 1 year ago

The latest version (v1.3.1) should now be compatible with numpy 1.24. With v1.3.1, csubst analyze and csubst simulate worked well without the error in my test dataset. Please reinstall CSUBST with pip install git+https://github.com/kfuku52/csubst and try again when you need numpy >=1.24. I will close this issue, but please feel free to reopen it if the problem persists.