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kgori / sigfit

Flexible Bayesian inference of mutational signatures
GNU General Public License v3.0
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Add function to extract model parameters #9

Closed baezortega closed 7 years ago

baezortega commented 7 years ago

Incorporate user function to obtain signatures and exposures (3D array with means, and lower and upper HPD limits) from stanfit object. There should be an argument in this function to “unnormalize” the signatures extracted with the “emu” model using human genome/exome opportunities, back to the human genome frequencies, in order to make them comparable with NMF (unnormalize=”human-genome”/”human-exome”).

baezortega commented 7 years ago

Implemented, but needs testing and documentation