Closed smoretti closed 9 years ago
kgori
commented
9 years ago Thanks for letting me know about this. The problem is that the scripts in bin haven't been updated in a while, and they try to import modules under outdated names. I'll update them.
smoretti
commented
9 years ago OK, thanks, waiting for the update.
Also python setup.py test returns an error about UniCode: skip test because of Non-ASCII character '\xe2' in file treeCl/collection.py Don't know if this is linked with my terminal settings or with an error.
Regards
kgori
commented
9 years ago The update is in place. I've removed the non ascii character (which was something invisible that I'd cut&pasted from somewhere), and updated the scripts. I'll leave the issue open until you can install successfully.
smoretti
commented
9 years ago Hi Installation is successful now, thanks.
Just two remarks:
kgori
commented
9 years ago Hi. Glad you have it installed. Thanks for the report about the failing test, it was badly written.
Hi
I have issues loading bootstrap, seqconvert & treeCl found in bin/ Loading treeCl API looks to work fine (python -c "import treeCl") (Python 2.7.5, Linux 2.6.32-573.8.1.el6.x86_64 treeCl 0.1.5)
$ bootstrap Traceback (most recent call last): File "/software/Phylogeny/treeCl/0.1.5/bin/bootstrap", line 7, in
from treeCl.datastructs.trcl_seq import TrClSeq as Seq
ImportError: No module named datastructs.trcl_seq
$ seqconvert Traceback (most recent call last): File "/software/Phylogeny/treeCl/0.1.5/bin/seqconvert", line 6, in
from treeCl.datastructs.seq import Seq
ImportError: No module named datastructs.seq
$ treeCl Traceback (most recent call last): File "/software/Phylogeny/treeCl/0.1.5/bin/treeCl", line 17, in
from treeCl import Collection, Clustering, DistanceMatrix, Partition, Plotter, Scorer
ImportError: cannot import name Clustering
Other tools in bin/ look to load fine.
Don't know what to do to solve that. Regards