Bio.Alphabet removed from biopython

kgori / treeCl

Clustering phylogenetic trees with python

MIT License

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Bio.Alphabet removed from biopython #21

Closed kgori closed 3 years ago

kgori commented 3 years ago

Causes build failure on Travis for python 3.6.

The Alphabet module was removed from biopython 1.79 in Sept 2020. Either need to specify the dependency as <1.79, or remove uses of Alphabet. Will probably remove references to Alphabet, as it always seemed fairly pointless anyway.

kgori commented 3 years ago

This is fixed in dev, but issues #22 and #23 still need to be fixed before making a new release