khanhlee bert-enhancer issues - Githubissues

khanhlee / bert-enhancer

A Transformer Architecture Based on BERT and 2D Convolutional Neural Network to Identify DNA Enhancers from Sequence Information

24 stars 13 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

How to make code automatic for sequence feature extraction

#13 tabrejmsc opened 1 year ago
0
extract_features.py

#12 xixinhy opened 2 years ago
1
Fine tuning on input.txt

#11 FAhtisham opened 2 years ago
1
Journal Club with one of the authors

#10 enryH opened 2 years ago
5
There are some sequences in both ind and cv

#9 roadwide opened 2 years ago
0
the general framework of the model

#8 Carrotljw opened 3 years ago
10
Model flow problem

#7 lhy0322 opened 3 years ago
1
Hi @khanhlee I am trying to implement your model, my problem at the point is how did you use 1484 DNA sequences in feature extraction using BERT in first place

#6 Pragati33 closed 3 years ago
0
seq file to jsonl file

#5 Rr-shan opened 3 years ago
1
cannot generate JSON files

#4 Rr-shan opened 3 years ago
10
pre-training files ./bert_large_L-24_H-1024_A-16_I-512.json

#3 Rr-shan opened 3 years ago
5
problem in extract_seq.py

#2 lyuly closed 3 years ago
2
2D_CNN.py unclear

#1 cometta opened 3 years ago
7