Consider what other minimal pre-processing steps should be included

khanlab / SPIMprep

A Snakemake workflow for pre-processing single plane illumination microscopy (SPIM, aka lightsheet microscopy)

MIT License

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Consider what other minimal pre-processing steps should be included #10

Open akhanf opened 6 months ago

akhanf commented 6 months ago

So far only includes flatfield correction (basicpy) and stitching (bigstitcher). Note that stitching with bigstitcher performs intensity rescaling intrinsically. Any other steps to consider?

akhanf commented 4 months ago

Deconvolution was suggested