Clean-up SPIM JSON file

khanlab / SPIMprep

A Snakemake workflow for pre-processing single plane illumination microscopy (SPIM, aka lightsheet microscopy)

MIT License

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Open akhanf opened 5 months ago

akhanf commented 5 months ago

It is bids-compliant but has alot of intermediate gunk (e.g. the tile transformations)..

Could consider keeping the intermediate metadata.json file as a temp file, then having a rule that cleans it up downstream..