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khanlab / SPIMprep

A Snakemake workflow for pre-processing single plane illumination microscopy (SPIM, aka lightsheet microscopy)
MIT License
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Report generation #28

Open akhanf opened 3 months ago

akhanf commented 3 months ago

Would be nice to generate some report of what was processed, QC checks etc, in the resulting BIDS dataset.. Will need to break this issue into multiple PR's most likely..

akhanf commented 2 months ago

maybe could add a javascript viewer? https://github.com/hms-dbmi/viv