update to accommodate differing numbers of stains/channels

khanlab / SPIMprep

A Snakemake workflow for pre-processing single plane illumination microscopy (SPIM, aka lightsheet microscopy)

MIT License

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Closed akhanf closed 3 months ago

akhanf commented 3 months ago

Closes #38

TODO:

[x] run a case with single stain to see if any downstream bugs need to be fixed..

akhanf commented 3 months ago

also exposed more options for bigstitcher steps, in case these are needed to fine-tune performance..