fix: actually fix the bug that disabled stitching

khanlab / SPIMprep

A Snakemake workflow for pre-processing single plane illumination microscopy (SPIM, aka lightsheet microscopy)

MIT License

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fix: actually fix the bug that disabled stitching #7

Closed akhanf closed 6 months ago

akhanf commented 6 months ago

Had input xml used instead of output xml, which was causing the stitching transform to be applied to the bdv xml instead of the actual output xml (since it writes in-place)..