khanlab / snakebids

Snakemake + BIDS
https://snakebids.readthedocs.io
MIT License
17 stars 13 forks source link

demo on the bids apps website #189

Open Remi-Gau opened 2 years ago

Remi-Gau commented 2 years ago

hey

quick question from a bids maintainers: would it make sense to create a mini app using snakebids and add it as an example / template on the bids app repo ?

we have one template already there but I am thinking that we could have a second one that has some better BIDS practices

do you think that snakebids is stable enough to be put out there?

akhanf commented 2 years ago

That's a great idea! Yes we can put something together for the bids app repo, I am thinking one that just replicates what the existing bids app example does would be useful for learning.

Remi-Gau commented 2 years ago

That was exactly my thoughts too. Fantastic.

akhanf commented 2 years ago

Took an initial stab at it here: https://github.com/akhanf/example-snakebids

Let me know what you guys think, and PRs are welcome of course

akhanf commented 2 years ago

I updated the example app again, @tkkuehn @kaitj @pvandyken please have a look when you can.

FYI I also made the simpler example (not bids app) workflow we talked about, that is here: https://github.com/akhanf/example-snakebids-simple

Remi-Gau commented 2 years ago

@akhanf thanks for all this. Will try to review and give you suggestions. Apparently I am better at opening issues than reviewing PRs. 🙈

akhanf commented 2 years ago

That would be super, thanks Remi! Actually the PRs on that repo are merged so you can still work to your strengths and add any issues there! 😉