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khanlab / tar2bids

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Remove .bval and .bvec files from anat (mp2rage) #41

Closed kaitj closed 8 months ago

kaitj commented 8 months ago

Some recent MP2RAGE acquisitions now contain (0019, 100c) [B_value] in the DICOM header, causing dcm2niix to interpret these images as diffusion and generating a .bval and .bvec file. As it no longer follows the BIDS spec since these are not anatomical-associated files, the bids validation is failing.

akhanf commented 8 months ago

does this happen with the latest version of dcm2niix too?

kaitj commented 8 months ago

does this happen with the latest version of dcm2niix too?

Hmm I'm not sure. I see they just released a new version 2 weeks ago. My guess from quickly skimming through the issues closed is that it wouldn't fix this issue, but it is worth testing it out.