Fix b0 bvec/bval - Githubissues

khanlab / tar2bids

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Fix b0 bvec/bval #8

Closed akhanf closed 5 years ago

akhanf commented 5 years ago

incorporates latest dcm2niix for adding bval/bvec for b0 only dwi data
added -x option to force dcm2niix direct nifti conversion into sourcedata folder
added OGSE and uFA (experimental) to cfmm_base

akhanf commented 5 years ago

Note that this PR breaks bval/bvec generation for Bruker data -- as a fix, recommend to use the -x option and copy the resulting .mvec/bval files over from sourcedata to bids. TODO for dcm2niix: use Bruker metadata for extracting bvec/bval instead of Bmatrix..