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kharchenkolab / Baysor

Bayesian Segmentation of Spatial Transcriptomics Data
https://kharchenkolab.github.io/Baysor/
MIT License
152 stars 31 forks source link

add more channel #108

Closed andynkili closed 2 months ago

andynkili commented 8 months ago

Dear Baysor developers,

Is there a way/option to include multiple channels (not just the DAPI)?

Best, Andy

VPetukhov commented 8 months ago

Dear @andynkili ,

Currently Baysor only accepts segmentation mask as input. This segmentation could be done based on multiple stains. Could you please expand on what use case you want to cover with multiple stains? Maybe we could add it in the pipeline.