Error: LoadError: Method Error

[marzaidi]

i keep getting this error when i execute baysor run:

ERROR: LoadError: MethodError: no method matching tryparse(::Type{Symbol}, ::String)

Closest candidates are: tryparse(::Type{Union{}}, ::Any...; kwargs...) @ Base parse.jl:257 tryparse(::Type{FilePathsBase.PosixPath}, ::AbstractString) @ FilePathsBase ~/.julia/packages/FilePathsBase/Laclt/src/posix.jl:15 tryparse(::Type{Float16}, ::AbstractString) @ Base parse.jl:302 ...

Stacktrace: [1] command_main(ARGS::Vector{String}) @ Baysor ~/.julia/packages/Comonicon/F3QqZ/src/codegen/julia.jl:490 [2] command_main() @ Baysor ~/.julia/packages/Comonicon/F3QqZ/src/codegen/julia.jl:90 [3] top-level scope @ ~/.julia/bin/baysor:15

[VPetukhov]

Looks like a duplicate of https://github.com/kharchenkolab/Baysor/issues/138 .

Same as there, please, provide more information. The OS, the command you ran and full error stacktrace and full log.

[marzaidi]

OS: Linux

Command: baysor run -x x_location -y y_location -z z_location -g feature_name -m 15 '~/transcripts.csv' --output "outputs/baysor"

ERROR: LoadError: MethodError: no method matching tryparse(::Type{Symbol}, ::String)

Closest candidates are: tryparse(::Type{Union{}}, ::Any...; kwargs...) @ Base parse.jl:257 tryparse(::Type{FilePathsBase.PosixPath}, ::AbstractString) @ FilePathsBase ~/.julia/packages/FilePathsBase/Laclt/src/posix.jl:15 tryparse(::Type{Float16}, ::AbstractString) @ Base parse.jl:302 ...

Stacktrace: [1] command_main(ARGS::Vector{String}) @ Baysor ~/.julia/packages/Comonicon/F3QqZ/src/codegen/julia.jl:490 [2] command_main() @ Baysor ~/.julia/packages/Comonicon/F3QqZ/src/codegen/julia.jl:90 [3] top-level scope @ ~/.julia/bin/baysor:15 in expression starting at /dss/dsshome1/0C/go76saz2/.julia/bin/baysor:15