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kharchenkolab / Baysor

Bayesian Segmentation of Spatial Transcriptomics Data
https://kharchenkolab.github.io/Baysor/
MIT License
152 stars 31 forks source link

Issues on execute baysor:latest in docker. #53

Closed SeokJinYeo closed 1 year ago

SeokJinYeo commented 2 years ago

I am trying to use baysor with docker. I had no problem with vpetukhov/baysor:master. I could run baysor. However, when I try to use vpetukhov/baysor:latest version, there was some issue. When I run baysor, the error happened.

baysor
ERROR: Unable to find compatible target in system image.

How can I use baysor:latest version? Can I learn the reason of this error? Any help would be very appreciated.

I'm using windows(x64).

VPetukhov commented 1 year ago

Hi @SeokJinYeo , The reason is that compiled julia system images use certain CPU flags, which may not be available in your CPU. I tried to set them as general as reasonably possible, but disregarding all CPU optimization would lead to a huge drop in performance, so I can't make it 100% general. If the problem persists with the new Docker image (v0.6.0), I suggest building docker on your own (clone the repo, go to the directory and run docker build .). It would produce an equivalent docker image, but would guarantee that the CPU optimizations are compatible with your machine.