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kharchenkolab / cacoa

Single-cell Case Control Analysis
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Warning in estimateClusterFreeExpressionShifts() #35

Closed rrydbirk closed 1 year ago

rrydbirk commented 1 year ago 
Warning in private$getTopGenes(n.top.genes, gene.selection = gene.selection,  :
  Please run estimateClusterFreeDE() first to use gene.selection='z' or 'lfc'. Fall back to gene.selection='expression'.
as(<dgCMatrix>, "dgTMatrix") is deprecated since Matrix 1.5-0; do as(., "TsparseMatrix") instead
rrydbirk commented 1 year ago

Fixed in 5725b2b.