search

kharchenkolab / gpsFISH

Optimization of gene panels for targeted spatial transcriptomics
Other
7 stars 1 forks source link

Error in gpsFISH_optimize on tutorial data #15

Closed pakiessling closed 1 year ago

pakiessling commented 1 year ago

Hi I receive multiple errors while following the tutorial.

unused argument full_count_table

argument "cell_list" is missing

Has the function changed?

YidaZhang0628 commented 1 year ago

Based on this error message, it seems that you installed the development version of gpsFISH but followed the tutorial of the main version. The function gpsFISH_optimize is slightly different between the two versions. You can either follow this tutorial for the development version or re-install the main version of gpsFISH using the command below: install.packages('devtools') devtools::install_github("kharchenkolab/gpsFISH")