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kharchenkolab / gpsFISH

Optimization of gene panels for targeted spatial transcriptomics
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Installation issue #19

Closed simomounir closed 1 year ago

simomounir commented 1 year ago

Hi all,

I wanted to run the package and try it but unfortunately I ran into am installation bug. Something around these lines:

\processx.dll: Permission denied 3: In i.p(...) : installation of package ‘rstan’ had non-zero exit status 4: In i.p(...) : installation of package ‘ranger’ had non-zero exit status 5: In i.p(...) : installation of package ‘....../gpsFISH_0.1.0.tar.gz’ had non-zero exit status

Any sol;ution? Anyone who ran into the same issue and solved it?

Thanks in advance for looking into this:

More details:

platform x86_64-w64-mingw32
arch x86_64
os mingw32
system x86_64, mingw32
status
major 4
minor 1.2
year 2021
month 11
day 01
svn rev 81115
language R
version.string R version 4.1.2 (2021-11-01) nickname Bird Hippie

YidaZhang0628 commented 1 year ago

Based on the information, it seems that the installation failed because there are problems when installing rstan and ranger. Can you try to install these two packages separately and then install gpsFISH?

simomounir commented 1 year ago

I tried installing the packages separately, and yet not success. Tried to install without compiling and it seems to work for now.