why genotype1 have tumor cells?

kharchenkolab / numbat

Haplotype-aware CNV analysis from single-cell RNA-seq

https://kharchenkolab.github.io/numbat/

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Open BioAmelie opened 6 months ago

BioAmelie commented 6 months ago

@teng-gao Hi, You mentioned that clone1 is normal cells (https://kharchenkolab.github.io/numbat/articles/results.html). Why did I get two tumor cells? Is it because the p_CNV for these two cells is greater than 0.5?

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teng-gao commented 6 months ago

Are most cells in clone 1 assigned to the normal compartment? Any chance you can attach the clone_post dataframe?