The package version 1.0.0 is now published on CRAN. I didn't meticulously track changes, but here are some highlights, which were written in the CHANGELOG:
The classes Pagoda2() and p2ViewPagodaApp() are now R6 classes; note pagoda2WebApp() is still a reference class as it depends on Rook
The package version 1.0.0 is now published on CRAN. I didn't meticulously track changes, but here are some highlights, which were written in the CHANGELOG:
Pagoda2()andp2ViewPagodaApp()are now R6 classes; notepagoda2WebApp()is still a reference class as it depends on Rookp2dataanddratto install PBMC data for pagoda2 vignettes and examples. This was largely due to the size of the data and CRAN rules. Refer to https://github.com/kharchenkolab/p2data & https://github.com/kharchenkolab/dratmessage()spacing forverbosestatementspar(), removing calls toinstalled.packages(), etc.read10xMatrix()was added