Open schlogl2017 opened 3 years ago
I change the imports to: from fastai.text.all import *. And now the error change to:
---------------------------------------------------------------------------
NameError Traceback (most recent call last)
<ipython-input-9-70b698022c71> in <module>
39 pass
40
---> 41 class GenomicVocab(Vocab):
42 def __init__(self, itos):
43 self.itos = itos
NameError: name 'Vocab' is not defined
I am facing these exact same issues. Could you find any solution? Did it work for you?
No sir! If i got something I will update you! Be save
I am facing these exact same issues. Could you find any solution? Did it work for you?
I got this maybe could help
I'm running it without issues in colab, just start your notebook with: !pip3 install fastai==1.0.61 !pip install biopython clone the repo and you ready to go!
also... import sys sys.path.append('path to cloned repo')
Thanks. This issue seems resolved. I hope the creator also adds a requirements.txt file to the repository, that would be complete.
While training the GLM language model, I am getting memory error. My system has 32 gigs of RAM. Are you facing any such issues?
I can first run this: Human Genome LM 0 Data Processing https://github.com/kheyer/Genomic-ULMFiT/blob/master/Mammals/Human/Genomic%20Language%20Models/Human%20Genome%20LM%200%20Data%20Processing.ipynb
But MEMORY ERROR in this: Human Genome LM 5 3-mer Stride 1 Language Model https://github.com/kheyer/Genomic-ULMFiT/blob/master/Mammals/Human/Genomic%20Language%20Models/Human%20Genome%20LM%205%203-mer%20Stride%201%20Language%20Model.ipynb
I'm having the same problem. Have you guys run it through successfully? If so, can you give me the versions of the various packages?
I can't running your script because the utils is giving this error in jupyter notebook! Any tip for make it work?
Thank you
NameError: name 'BaseTokenizer' is not defined