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khodosevichlab / CRMetrics

Summarization of CellRanger count metrics.
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Clean up count matrices #25

Closed rrydbirk closed 2 years ago

rrydbirk commented 2 years ago

We need a function for a final clean up of the count matrices, i.e. filter for low depth, high mito.fraction, doublets

rrydbirk commented 2 years ago

Added in 5a4f0f00d42a04a6ba0135ed9800414f324756a0, plotting added in 5178f2a4e41348234ec13d6622658bff97e10d14