Add functionality for variable mito.fraction vector - Githubissues

khodosevichlab / CRMetrics

Summarization of CellRanger count metrics.

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Add functionality for variable mito.fraction vector #36

Closed rrydbirk closed 2 years ago

rrydbirk commented 2 years ago

Same as for depth.cutoff vector, allow for sample-wise cutoffs.

[x] Add for plotUmap
[x] Add for filterCms
[x] Add for plotFilteredCells
[x] Create plotMitoFraction (similar to plotDepth)

rrydbirk commented 2 years ago

plotUmap in https://github.com/khodosevichlab/CRMetrics/commit/41bd095f1269ecdb6174a345f9f8d1dcf21cb146 filterCms in https://github.com/khodosevichlab/CRMetrics/commit/dd996fb3ec628f2d8279247254603d6b593cfcc4

rrydbirk commented 2 years ago

plotFilteredCells in https://github.com/khodosevichlab/CRMetrics/commit/77b6ef3fcc1764af8d8e819aeaa9cfd331a6ce75

rrydbirk commented 2 years ago

plotMitoFraction in https://github.com/khodosevichlab/CRMetrics/commit/0204a6cf6a8e6285c70d3a0e88ff564c22e7a577