Add SAM/BAM input as alternative to fastq

khuang28jhu / bs3

BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.

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Add SAM/BAM input as alternative to fastq #18

Open okartal opened 5 years ago

okartal commented 5 years ago

SNAP can take unaligned SAM/BAM files as input, which is nice to handle metadata tags that have been added prior to sequencing. It would be good if BS-Seeker3 would expose this option of SNAP.