Hi, I ran bs3 with your test data without any problem. But when I'm trying to index hg38, indexing done without any error ([Done] Build Whole genome preprocessing) while align gave "Unable to open file 'reference_genome/hg38.fa_snap/W_C2T/GenomeIndex". I checked the hg38.fa_snap folder and there is no file named as GenomeIndex. So I'm guessing there is something wrong with index. Is there anyway to check what's the problem?
Hi, I ran bs3 with your test data without any problem. But when I'm trying to index hg38, indexing done without any error ([Done] Build Whole genome preprocessing) while align gave "Unable to open file 'reference_genome/hg38.fa_snap/W_C2T/GenomeIndex". I checked the hg38.fa_snap folder and there is no file named as GenomeIndex. So I'm guessing there is something wrong with index. Is there anyway to check what's the problem?