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khughitt / EuPathDB

EuPathDB recipe for the Bioconductor AnnotationHub
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OrgDb datasets missing from recent AH versions? #39

Open khughitt opened 1 year ago

khughitt commented 1 year ago

E.g.:

AnnotationHub with 895 records
# snapshotDate(): 2022-04-25
# $dataprovider: FungiDB, TriTrypDB, PlasmoDB, MicrosporidiaDB, ToxoDB, CryptoDB, AmoebaDB, PiroplasmaDB, GiardiaDB, TrichDB
# $species: Plasmodium falciparum, Trypanosoma cruzi, Toxoplasma gondii, Cryptosporidium hominis, Trypanosoma brucei, Plasmodium yoelii,...
# $rdataclass: GRanges, TxDb
...

Either the process needs to be updated to make those datasets available, or the README should be updated to not point to these files.

cparsania commented 1 year ago

Any update on this issue ? FungiDB OrgDb files are missing from annotationhub