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khyox / recentrifuge

Recentrifuge: robust comparative analysis and contamination removal for metagenomics
http://www.recentrifuge.org
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The last stable release of pandas is breaking retest #17

Closed khyox closed 5 years ago

khyox commented 5 years ago

Bug report

Bug summary

CI build is failing: The last stable release of pandas is breaking retest.

Command line

retest -l -r -d -m -s

Actual outcome

After a minimum code update to avoid (uncaught) exception:

(...)

>>> COMPARING ./rcf RESULTS WITH STANDARD:
>> TEST FOR _sample_stats... FAILED!
Test results are:
            ctrl1  ctrl2  ctrl3  smpl1  smpl2  smpl3  smpl4  smplH
Length max    200    200    200    200    200    200    200    200
Length max  200.0  200.0  200.0  200.0  200.0  200.0  200.0  200.0
... but standard results are:
               ctrl1     ctrl2     ctrl3  ...     smpl3     smpl4     smplH
Length max       200       200       200  ...       200       200       200
Seqs. read  100000.0  100000.0  100000.0  ...  100000.0  100000.0  600000.0

[1 rows x 8 columns]

Process finished with exit code 8

Expected outcome

(...)

Process finished with exit code 0

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