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khyox / recentrifuge

Recentrifuge: robust comparative analysis and contamination removal for metagenomics
http://www.recentrifuge.org
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Error code 13? #53

Closed BZed81 closed 6 months ago

BZed81 commented 6 months ago

Bug report

Bug summary

Running Recentrifuge

Command line

rcf -f 

> Paste your code here
**PermissionError: [Error 13] Permission denied: 'output.rcf.html'**

#### Data

<!--Please give relevant information about the files Recentrifuge tried to analyze: Output of Centrifuge, LMAT, CLARK(S), Kraken, etc.,  number of controls (if any), number of regular samples, and any other information that you consider applicable to the issue-->
  * Format of input data (Centrifuge, LMAT, CLARK, Kraken, or other —generic interface—)?
  * If the generic interface was used, please provide some lines selected from the data files as a sample of the format:
  * Control samples (if any):
  * Regular samples:

### Actual outcome

<!--The output produced by the above code, which may be a screenshot, console output, etc.-->

If applicable, paste the console output here

# #



### Expected outcome

<!--If this used to work in an earlier version of Recentrifuge, please note the version it used to work on-->

### Versions 
<!--Please specify your platform and versions of the relevant libraries you are using:-->
  * Operating system:
  * Python version:
  * Recentrifuge version: 
  * Release of Centrifuge, LMAT, CLARK, Kraken, etc. (version used to generate the input data):
  * Pandas version (if applicable):
  * Other libraries (if applicable):
khyox commented 6 months ago

The bug report is incomplete, but from the output that I can see it looks like you don't have permissions to write in the directory. Please make sure you have the appropriate permission in the working directory.