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khyox / recentrifuge

Recentrifuge: robust comparative analysis and contamination removal for metagenomics
http://www.recentrifuge.org
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Excel output with empty columns #8

Closed blwe closed 6 years ago

blwe commented 6 years ago

Hi there! Thank you very much for recentrifuge, the HTML output is incredible useful! However, I have a problem with the Excel output. It has empty columns everywhere. Could you check it, please? Thanks a lot!

khyox commented 6 years ago

Hi @blwe! Thank you very much for reporting this issue! I think I have reproduced the problem you have found. The source of the bug was a change in naming the derivate samples some releases ago. I will come back with a solution soon and let you know. Thanks!

khyox commented 6 years ago

OK, the issue is solved in 8d8cfb69e65727962ab2f12f0ddb3ab32c7adae4. The problem was limited to the cmplxCruncher Excel output, not the full (default) Excel output. Could you confirm that this was your case? Thanks for reporting!

blwe commented 6 years ago

Yeah, that was exactly my case! It's working now! Thanks for the quick solution!!

my-serendipity commented 6 years ago

For me it would be very useful to have plain csv output instead of the excel one!

khyox commented 6 years ago

Hi. Could you please open an issue for that feature request? Thanks!

On Sat, Oct 6, 2018, 13:53 my-serendipity notifications@github.com wrote:

For me it would be very useful to have plain csv output instead of the excel one!

— You are receiving this because you were assigned. Reply to this email directly, view it on GitHub https://github.com/khyox/recentrifuge/issues/8#issuecomment-427567893, or mute the thread https://github.com/notifications/unsubscribe-auth/AD61kZ7_xCEub3jlkERmJvFJvJ3XCLIQks5uiJmqgaJpZM4XLP01 .

my-serendipity commented 6 years ago

Sure!