🐛 Update Suggested File Paths - Githubissues

kids-first / kf-alignment-workflow

:microscope: Alignment workflow for Kids-First DRC

Apache License 2.0

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🐛 Update Suggested File Paths #116

Closed dmiller15 closed 3 years ago

dmiller15 commented 3 years ago

Description

New file locations for suggested values.

Part of https://github.com/d3b-center/bixu-tracker/issues/1027

Type of change

[x] Bug fix (non-breaking change which fixes an issue)

How Has This Been Tested?

[x] Alignment: https://cavatica.sbgenomics.com/u/danmiller/pubapp-test/tasks/c6afba80-dc5f-47e4-ab2c-6bcee6aca053/
[x] HaplotypeCaller: https://cavatica.sbgenomics.com/u/danmiller/pubapp-test/tasks/10523ccd-f4ac-40c3-8152-39e9418a3759/

Test Configuration:

Environment:
Test files:

Checklist:

[x] My code follows the style guidelines of this project
[x] I have performed a self-review of my own code
[x] I have commented my code, particularly in hard-to-understand areas
[x] I have made corresponding changes to the documentation
[x] My changes generate no new warnings
[x] I have added tests that prove my fix is effective or that my feature works
[x] New and existing unit tests pass locally with my changes
[x] Any dependent changes have been merged and published in downstream modules
[x] I have checked my code and corrected any misspellings
[x] I have committed any related changes to the PR