Opens the port for bamtofastq_chomp step. This port allows some troubleshooting for extremely large, multi-readgroup BAM inputs where aggressive job stacking caused instances to run out of disk space.
[x] Bug fix (non-breaking change which fixes an issue)
[x] New feature (non-breaking change which adds functionality)
How Has This Been Tested?
Please describe the tests that you ran to verify your changes. Provide instructions so we can reproduce. Please also list any relevant details for your test configuration
[ ] I guess this was already tested by Brian but I'll do a test when I can find a good BAM for it.
Test Configuration:
Environment:
Test files:
Checklist:
[ ] My code follows the style guidelines of this project
[ ] I have performed a self-review of my own code
[ ] I have commented my code, particularly in hard-to-understand areas
[ ] I have made corresponding changes to the documentation
[ ] My changes generate no new warnings
[ ] I have added tests that prove my fix is effective or that my feature works
[ ] New and existing unit tests pass locally with my changes
[ ] Any dependent changes have been merged and published in downstream modules
[ ] I have checked my code and corrected any misspellings
[ ] I have committed any related changes to the PR
Description
Opens the port for bamtofastq_chomp step. This port allows some troubleshooting for extremely large, multi-readgroup BAM inputs where aggressive job stacking caused instances to run out of disk space.
Fixes https://github.com/d3b-center/bixu-tracker/issues/1432
Type of change
How Has This Been Tested?
Please describe the tests that you ran to verify your changes. Provide instructions so we can reproduce. Please also list any relevant details for your test configuration
Test Configuration:
Checklist: