👥Mb merge public-production app

[migbro]

Description

This is the proposed workflow for the synchronized public/production cavatica app.

Related issue https://app.zenhub.com/workspaces/d3b-bfx-5cdd720eed0dce4209e0b8a5/issues/d3b-center/bixu-tracker/746

Type of change

Please delete options that are not relevant.

• [ ] New feature (non-breaking change which adds functionality)
• [ ] This change requires a documentation update

How Has This Been Tested?

Please describe the tests that you ran to verify your changes. Provide instructions so we can reproduce. Please also list any relevant details for your test configuration

• [ ] Pushed here https://cavatica.sbgenomics.com/u/kfdrc-harmonization/kf-reference-pipeline/apps/#kfdrc-harmonization/kf-reference-pipeline/kfdrc-alignment-workflow
• [ ] Started job here: https://cavatica.sbgenomics.com/u/kfdrc-harmonization/kf-reference-pipeline/tasks/35cbee47-3745-4dc2-983c-74911cd65f01/#, will abort since docs, not logic changed. File inputs show correctly

NOTE I will update File IDs once more after copying to apps-publisher project and delete old wf file.

Test Configuration:

• Environment: cwltool generates warnings, but considered acceptable
• Test files:

Checklist:

• [x] My code follows the style guidelines of this project
• [x] I have performed a self-review of my own code
• [x] I have commented my code, particularly in hard-to-understand areas
• [x] I have made corresponding changes to the documentation
• [x] My changes generate no new warnings
• [x] I have added tests that prove my fix is effective or that my feature works
• [x] New and existing unit tests pass locally with my changes
• [x] Any dependent changes have been merged and published in downstream modules
• [x] I have checked my code and corrected any misspellings