✨ Add new SE, GF columns for Bix

[znatty22]

Todo

• [x] Push migrations
• [x] Update workflow_type enum with values from Bix

[HuangXiaoyan0106]

@znatty22 We have updated the kf_pipeline_outputs.csv file.

• current workflow workflow_type enum

  Alignment
  Family-Joint-Genotyping
  GATK-HaplotypeCaller-gVCF
  Germline-Mutation
  Long-Reads-Mutation
  RNAseq-Analysis
  Single-VCF-Genotyping
  Somatic-Mutation

• current workflow data_type enum

  Adapter Stats
  Alignment Metrics
  Alignment Stats
  Alignment Summary
  Alternative Splicing
  Annotated Gene Fusion
  Annotated Germline Structural Variation
  Annotated Somatic Copy Number Segment
  Annotated Somatic Mutation
  Annotated Somatic Mutation Index
  Annotated Variant Call
  Annotated Variant Call Index
  Artifact Metrics
  Chimeric Aligned Reads
  Consensus Somatic Mutation
  Consensus Somatic Mutation Index
  Contamination Estimation
  Control Copy Number
  Control Copy Number Segment
  Cutadapter Metrics
  Extra-Chromosomal DNA
  Familial Relationship
  Familial Relationship Report
  GC Metrics
  Gender Metrics
  Gender QC Metrics
  Gene Expression Count
  Gene Expression Quantification
  Gene Level Copy Number
  Genome Aligned Reads
  Genome Aligned Reads Index
  Genomic Variant
  Genomic Variant Index
  Het Call QC Metrics
  Insert Size Metrics
  Isoform Expression Quantification
  Masked Consensus Somatic Mutation
  Masked Consensus Somatic Mutation Index
  Masked Somatic Mutation
  Masked Somatic Mutation Index
  Pre-pass Somatic Structural Variation
  Pre-pass Somatic Structural Variation Index
  QC Metrics
  Quality Score Distribution
  RNAseq Alignment Metrics
  Raw Gene Fusion
  Raw Germline Structural Variation
  Raw Germline Structural Variation Index
  Raw Simple Somatic Mutation
  Raw Simple Somatic Mutation Index
  Raw Somatic Copy Number Segment
  Raw Somatic Structural Variation
  Raw Somatic Structural Variation Index
  Recalibration Report
  Reference Copy Number Profiling
  Relatedness QC Metrics
  Somatic Copy Number BAF
  Somatic Copy Number Diagram
  Somatic Copy Number Metrics
  Somatic Copy Number Ratio
  Somatic Copy Number Scatter
  Somatic Copy Number Segment
  Somatic Copy Number Subclone Segment
  Somatic Copy Number Variation
  Somatic Structural Variation
  Splice Junction
  Tool Log
  Tumor Copy Number
  Tumor Copy Number Segment
  Tumor Ploidy and Purity
  Tumor Purity
  Variant Calling Metrics
  WGS Metrics
  WXS Metrics

[HuangXiaoyan0106]

@znatty22 It seems you didn't update the data_type enum, like Metric -> Metrics, Read -> Reads, as I listed. or you will create a new PR for this?

[znatty22]

@znatty22 It seems you didn't update the data_type enum, like Metric -> Metrics, Read -> Reads, as I listed. or you will create a new PR for this?

@HuangXiaoyan0106 This requires a bigger effort because we have to ensure that none of the existing data uses old values before we get rid of them or we have to do a data migration. Since this is a bigger effort and different from adding new fields, I think it should be in a separate PR

[yuankunzhu]

@znatty22 It seems you didn't update the data_type enum, like Metric -> Metrics, Read -> Reads, as I listed. or you will create a new PR for this?

@HuangXiaoyan0106 This requires a bigger effort because we have to ensure that none of the existing data uses old values before we get rid of them or we have to do a data migration. Since this is a bigger effort and different from adding new fields, I think it should be in a separate PR

@znatty22 @HuangXiaoyan0106 we don't have to get rid of the old enum, I think for now, we just wanna make sure we have all the new enum added for the "data_type"