COLLABORATIONS/openTARGETS/example_run.sh: Resource file, can be used as a guide
COLLABORATIONS/openTARGETS/maf_openpedcan_v12_header.txt: Resource file not used because of DGD issue
COLLABORATIONS/openTARGETS/rename_filter_maf.py: Refactor to make variant filter reusable
scripts/convert_fusion_as_sv.py: Bug fix in desired output format and DGD entry - actually was used
Fixes # (issue)
Type of change
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[x] Bug fix (non-breaking change which fixes an issue)
[ \x] New feature (non-breaking change which adds functionality)
[ ] Breaking change (fix or feature that would cause existing functionality to not work as expected)
[ ] This change requires a documentation update
How Has This Been Tested?
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[ ] Ran locally
[ ] Successful load
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[x] My code follows the style guidelines of this project
[x] I have performed a self-review of my own code
[x] I have commented my code, particularly in hard-to-understand areas
[x] I have made corresponding changes to the documentation
[x] My changes generate no new warnings
[ ] I have added tests that prove my fix is effective or that my feature works
[x] New and existing unit tests pass locally with my changes
[x] Any dependent changes have been merged and published in downstream modules
[x] I have checked my code and corrected any misspellings
[x] I have committed any related changes to the PR
Description
This PR reflects the completed work that was needed to update/load OpenPedCan v12.
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Review:
Type of change
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How Has This Been Tested?
Please describe the tests that you ran to verify your changes. Provide instructions so we can reproduce. Please also list any relevant details for your test configuration
Test Configuration:
Checklist: