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kids-first / kf-model-fhir

🔥 FHIR Data Model for Kids First
https://kids-first.github.io/kf-model-fhir/ig/
Apache License 2.0
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Develop target API builder for sequencing experiment #196

Open liberaliscomputing opened 4 years ago

liberaliscomputing commented 4 years ago

Develop and test target API builder for sequencing_experiment. Consider the following steps:

liberaliscomputing commented 3 years ago

A target API builder generates and sends one JSON payload per row, so sequencing_experiment would need two target API builders, SequencingObservation and SequencingTask. Considering references, the order of ingest run should always be:

  1. Specimen
  2. GenomicFile
  3. SequencingObservation so that it can refer to an existing GenomicFile
  4. SequencingTask so that it can refer to existing 1) Specimen in input and 2) GenomicFile and SequencingObservation in output