kids-first / kf-model-omop

💡 Kids First OMOP Common Data Model Experimentation
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Investigate Cell Line Data Modeling #10

Open baileyckelly opened 5 years ago

baileyckelly commented 5 years ago

We need to evaluate what is needed to support cell line data modeling. Our current model is not sufficient as a cell line is derived from a sample.

allisonheath commented 5 years ago

Good point - I doubt these clinical data focused models will have good modeling of biospecimens (although maybe they'll surprise me). The human cell atlas is one place we could look to mimic some of their metadata information, for example here's the json schema for their cell lines: https://github.com/HumanCellAtlas/metadata-schema/blob/master/json_schema/type/biomaterial/cell_line.json and an example: https://github.com/HumanCellAtlas/metadata-schema/blob/master/examples/bundles/public-beta/HPSI_human_cerebral_organoids/cell_line_1.json