🐳 migrated kfdrc dockers to d3b-bixu

dmiller15 commented 3 years ago

Description

This PR changes the dockerPull statements to now pull from our d3b-bixu account on SBG. Also changed is the docker tag for STAR. The latest tag on kfdrc was really just 2.6.1d.

Part of https://github.com/d3b-center/bixu-tracker/issues/846

Type of change

[x] Bug fix (non-breaking change which fixes an issue)

How Has This Been Tested?

[x] https://cavatica.sbgenomics.com/u/kfdrc-harmonization/kf-reference-pipeline/tasks/769bb924-a9f2-4545-ba5f-843b81db2574/#
[x] Ubuntu and Fusionanno update: https://cavatica.sbgenomics.com/u/kfdrc-harmonization/kf-reference-pipeline/tasks/67a2fc07-621f-4477-ad82-69322f30ac97/#

Test Configuration:

Environment: Cavatica
Test files: see test

Checklist:

[x] My code follows the style guidelines of this project
[x] I have performed a self-review of my own code
[x] I have commented my code, particularly in hard-to-understand areas
[x] I have made corresponding changes to the documentation
[x] My changes generate no new warnings
[x] I have added tests that prove my fix is effective or that my feature works
[x] New and existing unit tests pass locally with my changes
[x] Any dependent changes have been merged and published in downstream modules
[x] I have checked my code and corrected any misspellings

zhangb1 commented 3 years ago

these three images in the tools are NOT in the SBG repo? @dmiller15 do you know why?

"dockerPull": "gaonkark/fusionanno:latest"
"dockerPull": "gcr.io/broad-cga-aarong-gtex/rnaseqc:latest"
"dockerPull": "ubuntu:18.04"

dmiller15 commented 3 years ago

Good catch on the fusionanno and ubuntu repos. We'll leave rnaseqc for now as it is not the dockerhub registry.

kids-first / kf-rnaseq-workflow