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kids-first / kf-rnaseq-workflow

:microscope: RNA-Seq workflow for Kids-First DRC
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GRCh38_v27_CTAT_lib_Feb092018.plug-n-play.tar.gz is no longer available #29

Open tgambin opened 2 years ago

tgambin commented 2 years ago

Hi, we are trying to use your pipeline and encountered a problem while trying to download GRCh38_v27_CTAT_lib_Feb092018.plug-n-play.tar.gz from broad. This file is no longer available (they provide only source data for this genecode version: https://data.broadinstitute.org/Trinity/CTAT_RESOURCE_LIB/__genome_libs_StarFv1.3/). Would you recommend to upgrade the genecode version for all input data? Or maybe you could provide a copy of GRCh38_v27_CTAT_lib_Feb092018.plug-n-play.tar.gz file if it is still available on your server? Thanks!

migbro commented 2 years ago

Hi @tgambin , thanks for bringing this to my attention! We do have a public reference repo on Cavatica, and that file can be found here: https://cavatica.sbgenomics.com/u/kfdrc-harmonization/kf-references/files/5f500135e4b0370371c051b0/. You may need an account, but it's free to sign up. Please let me know if this solution works for you.

tgambin commented 2 years ago

Great many thanks!