kids-first / kf-rnaseq-workflow

:microscope: RNA-Seq workflow for Kids-First DRC
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🏎 Updated reference for fusion annotator #42

Closed migbro closed 1 year ago

migbro commented 1 year ago

While implementing fusion annotator for DGD input, I noticed that the reference used was very large, and likely bloated for that tool. If you look at the fusion annotator script only two files which are like 3GB total out of the 30GB tar ball are used. This PR adds this new reference, and sets an instance type for annoFuse wf, which brings down processing time time from 11 minutes to 2 minutes!

Description

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Closes # https://github.com/d3b-center/bixu-tracker/issues/1768

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migbro commented 1 year ago

Just noting that this is indeed a breaking change. An input json for the old workflow would not work on this workflow as it would lack a now required input.

Good point, if one were using cwltool...if using cavatica, the defaults would sort of save it