kieranrcampbell clonealign issues - Githubissues

kieranrcampbell / clonealign

Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data

Apache License 2.0

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when colnames(L) get named in case they are NULL with colnames(Y) <- paste0("gene_", letters[seq_len(ncol(Y))]) wouldn't that give gene_NA if there are more than 26 genes?

#16 kieranrcampbell opened 3 years ago
0
the inference runs through one ELBO computation and throws an error (below) if rownames(L) and colnames(Y) don't match or are both NULL.

#15 kieranrcampbell opened 3 years ago
0
delta-CN and delta-RNA

#14 gianasco opened 4 years ago
1
size_factors parameter

#13 gianasco opened 4 years ago
1
module 'tensorflow' has no attribute 'reset_default_graph'

#12 skatragadda-nygc opened 4 years ago
4
Performance with multinomial likelihood

#11 pedrofale opened 5 years ago
9
row dimensionality issue

#10 NienkeMekkes closed 5 years ago
2
Solve the problem in installing clonealign

#9 XQBai closed 5 years ago
1
Remove outlying genes now multinomial likelihood is used

#8 kieranrcampbell closed 4 years ago
0
Newline after print

#7 alanocallaghan closed 5 years ago
1
Size Factor Fixes

#6 nceglia closed 5 years ago
0
How to quantify the clonal frequency consistency between DNA and CloneAlign?

#5 Puriney closed 5 years ago
2
Initial elbo is NA

#4 Puriney closed 4 years ago
7
Different runs upon the same input generated different results

#3 Puriney closed 5 years ago
4
Add test_that for gradient checking

#2 kieranrcampbell closed 6 years ago
0
Handle situation when copy number is 0

#1 kieranrcampbell opened 6 years ago
0