search

kieranrcampbell / ouija

Descriptive probabilistic marker gene approach to single-cell pseudotime inference
http://kieranrcampbell.github.io/ouija
28 stars 3 forks source link

Ouija not working w/ SCESet object #2

Open davismcc opened 8 years ago

davismcc commented 8 years ago

Exciting to try this out!

I didn't have any joy though, applying ouija to an SCESet object (see attached pic).

Looks like ouija could be clobbering the scater NAMESPACE on load? Or trying to access exprs() from scater when it actually comes from BiocGenerics/Biobase?

Let me know if you can't replicate - I'm using scater devel at the moment.

__dropbox_projects_hipsci-singlecell_-_master_-_rstudio
kieranrcampbell commented 8 years ago

Thanks for finding this, comes down to my own poor understanding of biobase inheritance. The latest commit should fix this, but let me know if you have any other issues.