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kimpenn / PIVOT

Platform for Interactive analysis and Visualization Of Transcriptomics data
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probleme with some input file #2

Closed aurelBZH closed 6 years ago

aurelBZH commented 6 years ago

hi Quin, thanks for your great app. I have a directory with some count file, one by sample ( i join you one of the file 319B.feature.count.txt) . It's tsv file with gene and count. When i try to upload them on Pivot i have an error message like this pivot_error_message . I think i have missed something but can't figure what.

ps we might be interested in a server version of your app.

Thanks for your help

Aurélien Béliard

qinzhu commented 6 years ago

Hello Aurélien,

Thanks for finding this bug. I found it happens when you use DESeq normalization and your input is not integer (Note that your data has decimal points, DESeq require int input). I've added a fix which automatically rounds up the non-int values if you use DESeq. Please update PIVOT with install_github("qinzhu/PIVOT") and see if it works with your data.

I'll release server version of PIVOT as soon as I can. Thanks again for the bug report and your interest in using PIVOT.

Best, Qin

aurelBZH commented 6 years ago

thanks for your quick response, it work now.