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kimpenn / PIVOT

Platform for Interactive analysis and Visualization Of Transcriptomics data
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Can't install PIVOT #4

Closed lida-R closed 5 years ago

lida-R commented 6 years ago

Hello, I'm new in R and RNA-Seq analysis. Your application seems very interesting to me and so close to what I would like to do. Thank you for sharing that. Actually I tried to install based on your manual but got below error:

install_github("qinzhu/PIVOT/") Error in parse_git_repo(repo) : Invalid git repo: qinzhu/PIVOT/ I installed and updated everything but still get the error. May I know what the reason is?

qinzhu commented 6 years ago

Hi, I also tried with my R and find the same problem. Very weird. But I somehow solved this problem by updating devtools, as shown below. Could you try the same command and see if it works? image

lida-R commented 6 years ago

Thank you for your reply. I tried the same command and still get the same error:

install.packages("devtools") Installing package into ‘C:/Users/azeighami/Documents/R/win-library/3.4’ (as ‘lib’ is unspecified) trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/devtools_1.13.4.zip' Content type 'application/zip' length 443915 bytes (433 KB) downloaded 433 KB

package ‘devtools’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in C:\Users\azeighami\AppData\Local\Temp\RtmpyawLhX\downloaded_packages

library("devtools") install_github("qinzhu/PIVOT/") Error in parse_git_repo(repo) : Invalid git repo: qinzhu/PIVOT/

qinzhu commented 6 years ago

I recently updated PIVOT and tested installation on both macOS and Linux. Seems installation works fine. The recent update may have fixed your problem.