Closed oursu closed 9 years ago
Hi Oana,
chr19 0 40000 7 0 2 0 ...
chr19 40000 80000 10 0 1 0 ...
chr19 80000 120000 8 0 1 0 ....
where each row's format is: chromosome, fragment start and end, list of frequencies in sorted order by their genomic location.
Thanks, Darya
Great, thank you Darya!
Hi,
Does the input matrix have to specified in terms of a fixed window size? I am asking this because I tried running Armatus with restriction fragment resolution, rather than a fixed window size, and in the results most domains have a size = resolution that Armatus outputs at the start of the run.
Thanks, Oana
Oana,
Yes, the elements in the matrix have to be evenly distributed (i.e. fixed window size apart). It is an implicit assumption in the dynamic program that finds domains.
Thanks!
Hi,
I have two quick questions about your armatus software, which I am excited to use.
Thanks, Oana