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kingsfordgroup / sailfish

Rapid Mapping-based Isoform Quantification from RNA-Seq Reads
http://www.cs.cmu.edu/~ckingsf/software/sailfish
GNU General Public License v3.0
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Can not index #103

Open tuan-tt opened 7 years ago

tuan-tt commented 7 years ago

I run sailfish (lastest version) with this command for index phase: ./sailfish index -t ../../index/transcripts.fasta -o ./ -k 31 and get this error 

Version Info: This is the most recent version of Sailfish
writing log to ./logs/sailfish_index.log
RapMap Indexer
PARSE ERROR: Argument: -k (--klen)
             Couldn't read argument value from string 'RapMap Indexer'

Brief USAGE: 
   foo  [-n] [-k <positive integer less than 32>] -i <path> -t <path> [--]
        [--version] [-h]

For complete USAGE and HELP type: 
   foo --help
tuan-tt commented 7 years ago

I also try run without argument -k but still get this error.

tuan-tt commented 7 years ago

Use your CentOS binary release and work normally.