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kingsfordgroup / sailfish

Rapid Mapping-based Isoform Quantification from RNA-Seq Reads
http://www.cs.cmu.edu/~ckingsf/software/sailfish
GNU General Public License v3.0
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installation error; undefined reference to symbol #109

Open cjieming opened 6 years ago

cjieming commented 6 years ago

Hi I reached 95% installation then Sailfish installation spit out this error:

/bin/ld: libsailfish_core.a(RapMapSAIndex.cpp.o): undefined reference to symbol '_ZTINSt13__future_base11_State_baseE@@GLIBCXX_3.4.15' /lib64/libstdc++.so.6: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[2]: [src/sailfish] Error 1 make[2]: Leaving directory `/home/software/sailfish_v0.10.1' make[1]: [src/CMakeFiles/sailfish.dir/all] Error 2 make[1]: Leaving directory `/home/software/sailfish_v0.10.1' make: *** [all] Error 2

Any idea how to resolve this? Something to do with libsailfish_core.a(RapMapSAIndex.cpp.o)?

Any help is appreciated. Thank you!

LiCanhui-Huyi commented 1 year ago

@cjieming Hello, I have encountered a similar problem and solved it. If you still need help, I need more detailed error information to help you solve the problem.