Hi! I have an error during make as below. It seems like it is complaining the missing file. I tried both github and gz file but both did work for me. Please help me out! Thanks!
[ 73%] Building CXX object src/CMakeFiles/sailfish_core.dir/SailfishIndexer.cpp.o
cd /project/qlong_ibi_lab/tools/sailfish-0.9.2/src && /project/ibilab/hpctools/miniconda3/bin/c++ -pthread -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DHAVE_ANSI_TERM -DHAVE_SSTREAM -DRAPMAP_SALMON_SUPPORT -Wall -std=c++11 -Wreturn-type -Werror=return-type -static-libstdc++ -Wno-deprecated-register -Wno-unused-local-typedefs -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/tests -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/include -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/include/eigen3 -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/external -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/external/cereal/include -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/external/install/include -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/external/install/include/rapmap -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/external/install/include/jellyfish-2.2.3 -o CMakeFiles/sailfish_core.dir/SailfishIndexer.cpp.o -c /project/qlong_ibi_lab/tools/sailfish-0.9.2/src/SailfishIndexer.cpp
In file included from /project/qlong_ibi_lab/tools/sailfish-0.9.2/src/SailfishIndexer.cpp:60:0:
/project/qlong_ibi_lab/tools/sailfish-0.9.2/external/install/include/rapmap/RapMapSAIndex.hpp:31:29: fatal error: spdlog/fmt/ostr.h: No such file or directory
compilation terminated.
make[2]: [src/CMakeFiles/sailfish_core.dir/SailfishIndexer.cpp.o] Error 1
make[2]: Leaving directory `/project/qlong_ibi_lab/tools/sailfish-0.9.2'
make[1]: [src/CMakeFiles/sailfish_core.dir/all] Error 2
make[1]: Leaving directory `/project/qlong_ibi_lab/tools/sailfish-0.9.2'
make: *** [all] Error 2
[taehyong@node062 sailfish-0.9.2]$
Hi! I have an error during make as below. It seems like it is complaining the missing file. I tried both github and gz file but both did work for me. Please help me out! Thanks!
[ 73%] Building CXX object src/CMakeFiles/sailfish_core.dir/SailfishIndexer.cpp.o cd /project/qlong_ibi_lab/tools/sailfish-0.9.2/src && /project/ibilab/hpctools/miniconda3/bin/c++ -pthread -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DHAVE_ANSI_TERM -DHAVE_SSTREAM -DRAPMAP_SALMON_SUPPORT -Wall -std=c++11 -Wreturn-type -Werror=return-type -static-libstdc++ -Wno-deprecated-register -Wno-unused-local-typedefs -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/tests -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/include -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/include/eigen3 -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/external -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/external/cereal/include -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/external/install/include -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/external/install/include/rapmap -I/project/qlong_ibi_lab/tools/sailfish-0.9.2/external/install/include/jellyfish-2.2.3 -o CMakeFiles/sailfish_core.dir/SailfishIndexer.cpp.o -c /project/qlong_ibi_lab/tools/sailfish-0.9.2/src/SailfishIndexer.cpp In file included from /project/qlong_ibi_lab/tools/sailfish-0.9.2/src/SailfishIndexer.cpp:60:0: /project/qlong_ibi_lab/tools/sailfish-0.9.2/external/install/include/rapmap/RapMapSAIndex.hpp:31:29: fatal error: spdlog/fmt/ostr.h: No such file or directory compilation terminated. make[2]: [src/CMakeFiles/sailfish_core.dir/SailfishIndexer.cpp.o] Error 1 make[2]: Leaving directory `/project/qlong_ibi_lab/tools/sailfish-0.9.2' make[1]: [src/CMakeFiles/sailfish_core.dir/all] Error 2 make[1]: Leaving directory `/project/qlong_ibi_lab/tools/sailfish-0.9.2' make: *** [all] Error 2 [taehyong@node062 sailfish-0.9.2]$