kingsfordgroup / sailfish

Rapid Mapping-based Isoform Quantification from RNA-Seq Reads
http://www.cs.cmu.edu/~ckingsf/software/sailfish
GNU General Public License v3.0
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A bug: fail in 'make' step #117

Open huangwb8 opened 3 years ago

huangwb8 commented 3 years ago

Hi~ I installed sailfish according to the official manual. When do 'make' step, some bugs appeared.

cd /Downloads/sailfish/external && curl -k -L http://downloads.sourceforge.net/project/boost/boost/1.59.0/boost_1_59_0.tar.gz -o boost_1_59_0.tar.gz && tar xzf boost_1_59_0.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100   345  100   345    0     0    910      0 --:--:-- --:--:-- --:--:--   910
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
curl: (7) Failed to connect to udomain.dl.sourceforge.net port 443: Connection refused
CMakeFiles/libboost.dir/build.make:92: recipe for target 'libboost-prefix/src/libboost-stamp/libboost-download' failed

The file 'boost_1_59_0.tar.gz' could not be correctly downloaded, which resulted in the pause of process. The link 'http://downloads.sourceforge.net/project/boost/boost/1.59.0/boost_1_59_0.tar.gz' seemed to related no correct file. Maybe it was discarded. Could you give some suggestions?

LiCanhui-Huyi commented 1 year ago

https://sourceforge.net/projects/boost/files/boost/1.59.0/ @huangwb8 I have encountered the same problem. Whether you have solved it or not, I think my answer can help people who encounter this problem in the future. The above is the new website. Due to the updating of websites, we often encounter that we can't download files when connecting a website with curl. Because the domain name has been updated. However, the curl command or wget cannot track the new URL. When you encounter this problem again, you can copy the URL, and then paste it into the browser to access it. Usually, the browser can take you to a new URL.